Virgile Adam, PhD

CNRS Researcher, Grenoble, France

Three-dimensional structures

Currently 39 structures deposited at the Protein Data Bank and 1 structure deposited at the Cambridge Structural Database

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Protein Data Bank (PDB) ID codes starting by 6xxx

6YN6

Name: LdcI

Description: Inducible lysine decarboxylase LdcI decamer, pH 5.2

Electron microscopy map

200-kV Tecnai F20 electron microscope

Resolution: 3.28 Å

6YN5

Name: LdcI

Description: Inducible lysine decarboxylase LdcI decamer, pH 7.0

Electron microscopy map

200-kV Tecnai F20 electron microscope

Resolution: 2.70 Å

6T3A

Name: A. victoria fluorescent protein rsEGFP2

Description: Difference-refined structure of rsEGFP2 10 ns following 400-nm laser irradiation of the off-state determined by SFX

X-ray source: SACLA Beamline BL3-EH4c

Space group: P21 21 21

Unit cell: a=52.0 b=62.9 c=72.1

Resolution: 1.85 Å

6T39

Name: A. victoria fluorescent protein rsEGFP2

Description: Crystal structure of rsEGFP2 in its off-state determined by SFX

X-ray source: SACLA Beamline BL3-EH4c

Space group: P21 21 21
Unit cell: a=51.7 b=62.9 c=71.7

Resolution: 1.60 Å

6GP1

Name: L. hemprichii fluorescent protein mEos4b

Description: mEos4b in the red long-lived dark state

X-ray source: ESRF Beamline ID23-1

Space group: P21 21 21

Unit cell: a=38.7 b=58.29 c=104.03

Resolution: 1.5 Å

6GP0

Name: L. hemprichii fluorescent protein mEos4b

Description: mEos4b in the red fluorescent state

X-ray source: ESRF Beamline ID23-1

Space group: P21 21 21

Unit cell: a=38.61 b=57.9 c=102.64

Resolution: 1.5 Å

6GOZ

Name: L. hemprichii fluorescent protein mEos4b

Description: mEos4b in the green long-lived dark state

X-ray source: ESRF Beamline ID23-1

Space group: P21 21 21

Unit cell: a=38.7 b=58.29 c=104.03

Resolution: 1.5 Å

6GOY

Name: L. hemprichii fluorescent protein mEos4b

Description: mEos4b in the green fluorescent state

X-ray source: ESRF Beamline ID23-1

Space group: P21 21 21

Unit cell: a=38.6 b=58.09 c=103.27

Resolution: 1.65 Å

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Protein Data Bank (PDB) ID codes starting by 5xxx

5O89

Name: A. victoria fluorescent protein rsEGFP2

Description:
XFEL structure of rsEGFP2 in the on-state

X-ray source: LCLS Beamline CXI

Space group: P21 21 21

Unit cell: a=51.7 b=62.3 c=71.9

Resolution: 1.7 Å

5O8C

Name: A. victoria fluorescent protein rsEGFP2

Description:
XFEL structure of rsEGFP2 1 ps after 400-nm irradiation of the off-state

X-ray source: LCLS Beamline CXI

Space group: P21 21 21

Unit cell: a=51.5 b=62.8 c=71.8

Resolution: 1.7 Å

5O8B

Name: A. victoria fluorescent protein rsEGFP2

Description:
XFEL structure of rsEGFP2 in the excited state 1 ps following 400-nm illumination

X-ray source: LCLS Beamline CXI

Space group: P21 21 21

Unit cell: a=51.5 b=62.8 c=71.8

Resolution: 1.7 Å

5O8A

Name: A. victoria fluorescent protein rsEGFP2

Description:
XFEL structure of rsEGFP2 in the off-state

X-ray source: LCLS Beamline CXI

Space group: P21 21 21

Unit cell: a=51.5 b=62.8 c=71.8

Resolution: 1.7 Å

5FVI

Name: L. hemprichii fluorescent protein IrisFP

Description: Synchrotron structure of IrisFP in grease at 100K

X-ray source: ESRF Beamline ID29

Space group: P21 21 21

Unit cell: a=78.6 b=95.9 c=139.9

Resolution: 2.4 Å

5FVG

Name: L. hemprichii fluorescent protein IrisFP

Description: Synchrotron structure of IrisFP without grease at 100K

X-ray source: ESRF Beamline ID29

Space group: P21 21 21

Unit cell: a=78.1 b=96.3 c=140.2

Resolution: 1.9 Å

5FVF

Name: L. hemprichii fluorescent protein IrisFP

Description: XFEL structure of IrisFP in grease at room temperature

X-ray source: SACLA Beamline BL3

Space group: P21 21 21

Unit cell: a=83.3 b=97.8 c=142.7

Resolution: 2.75 Å

5DU0

Name: A. victoria fluorescent protein rsFolder

Description:
Non-fluorescent off-state

X-ray source: ESRF Beamline ID29

Space group: C2

Unit cell: a=141.29 b=134.8 c=51.05

Resolution: 2.35 Å

5DTZ

Name: A. victoria fluorescent protein rsFolder

Description:
Fluorescent on-state

X-ray source: ESRF Beamline ID29

Space group: C2

Unit cell: a=142.47 b=134.56 c=51.72

Resolution: 1.5 Å

5DTY

Name: A. victoria fluorescent protein rsEGFP2

Description:
Non-fluorescent off-state

X-ray source: ESRF Beamline ID23-2

Space group: P21 21 21

Unit cell: a=51.19 b=62.81 c=70.55

Resolution: 1.5 Å

5DTX

Name: A. victoria fluorescent protein rsEGFP2

Description:
Fluorescent on-state

X-ray source: ESRF Beamline ID23-2

Space group: P21 21 21

Unit cell: a=50.99 b=62.91 c=70.84

Resolution: 1.45 Å

5DTL

Name: L. hemprichii fluorescent protein mEos2-A69T

Description: Lower blinking variant of mEos2

X-ray source: ESRF Beamline ID23-2

Space group: P1

Unit cell: a=73.37 b=96.50 c=100.06

Resolution: 2.7 Å

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Protein Data Bank (PDB) ID codes starting by 4xxx

4R6B

Name: L. hemprichii fluorescent protein IrisFP

Description: Photoresistant variant M159A

X-ray source: ESRF Beamline ID14-4

Space group: P21 21 21

Unit cell: a=86.70 b=96.35 c=139.43

Resolution: 2.0 Å

4LJD

Name: L. hemprichii fluorescent protein IrisFP

Description: IrisFP bleached in aerobic conditions

X-ray source: SLS Beamline PXII3

Space group: P21 21 21

Unit cell: a=85.99 b=96.53 c=140.19

Resolution: 2.5 Å

4LJC

Name: L. hemprichii fluorescent protein IrisFP

Description: IrisFP bleached by X-rays

X-ray source: ESRF Beamline ID29

Space group: P21 21 21

Unit cell: a=86.64 b=96.81 c=140.69

Resolution: 1.86 Å

4LJB

Name: L. hemprichii fluorescent protein IrisFP

Description: IrisFP bleached in anaerobic conditions

X-ray source: ESRF Beamline ID14-2

Space group: P21 21 21

Unit cell: a=86.09 b=96.41 c=140.03

Resolution: 1.9 Å

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Protein Data Bank (PDB) ID codes starting by 3xxx

3TMT

Name: L. hemprichii fluorescent protein IrisFP

Description: IrisFP, blinked chromophore

X-ray source: ESRF Beamline ID14-2

Space group: P21 21 21

Unit cell: a=84.84 b=96.51 c=140.00

Resolution: 2.0 Å

3TMR

Name: L. hemprichii fluorescent protein IrisFP

Description: IrisFP, native chromophore

X-ray source: ESRF Beamline ID14-2

Space group: P21 21 21

Unit cell: a=84.84 b=96.51 c=140.00

Resolution: 2.0 Å

3P8U

Name: L. hemprichii fluorescent protein mEosFP

Description: Monomeric EosFP, green fluorescent

X-ray source: ESRF Beamline ID14-3

Space group: P21 21 21

Unit cell: a=86.45 b=96.82 c=140.43

Resolution: 2.25 Å

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Protein Data Bank (PDB) ID codes starting by 2xxx

2VZX

Name: Dendronephthya sp. fluorescent protein Dendra2

Description: Dendra2 green fluorescent

X-ray source: ESRF Beamline ID14-4

Space group: P1

Unit cell: a=71.26 b=76.85 c=92.50

Resolution: 2.00 Å

2VVJ

Name: L. hemprichii fluorescent protein IrisFP

Description: IrisFP red, cis conformation

X-ray source: ESRF Beamline ID23-1

Space group: P21 21 21

Unit cell: a=85.67 b=96.62 c=140.17

Resolution: 2.0 Å

2VVI

Name: L. hemprichii fluorescent protein IrisFP

Description: IrisFP green, trans

X-ray source: ESRF Beamline ID14-3

Space group: P21 21 21

Unit cell: a=81.31 b=96.38 c=140.61

Resolution: 2.00 Å

2VVH

Name: L. hemprichii fluorescent protein IrisFP

Description: IrisFP green, cis conformation

X-ray source: ESRF Beamline ID14-3

Space group: P21 21 21

Unit cell: a=86.34 b=96.55 c=139.83

Resolution: 1.80 Å

2JI3

Name: D. baarsi Superoxide reductase (SOR, EC # 1.15.1.2)

Description: SOR E114A complexed with an iron-peroxide intermediate

X-ray source: ESRF Beamline ID14-4

Space group: I2 2 2

Unit cell: a=69.45 b=82.90 c=202.66

Resolution: 1.95 Å

2JI2

Name: D. baarsi Superoxide reductase (SOR, EC # 1.15.1.2)

Description: SOR E114A

X-ray source: ESRF Beamline ID29

Space group: I2 2 2

Unit cell: a=70.47 b=82.87 c=201.95

Resolution: 1.70 Å

2JI1

Name: D. baarsi Superoxide reductase (SOR, EC # 1.15.1.2)

Description: SOR wild-type

X-ray source: ESRF Beamline ID14-1

Space group: I2 2 2

Unit cell: a=70.39 b=82.99 c=204.35

Resolution: 1.70 Å

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Protein Data Bank (PDB) ID codes starting by 1xxx

1W2H

Name: M. tuberculosis Thimidylate kinase (TMPK, EC # 2.7.4.9)

Description: TMPK complexed with azidothymidine monophospate

X-ray source: ESRF Beamline ID14-4

Space group: P31 2 1

Unit cell: a=63.52 b=64.52 c=195.37

Resolution: 2.0 Å

1W2G

Name: M. tuberculosis Thimidylate kinase (TMPK, EC # 2.7.4.9)

Description: TMPK complexed with deoxythimidine

X-ray source: ESRF Beamline ID14-4

Space group: P31 2 1

Unit cell: a=63.87 b=63.87 c=195.34

Resolution: 2.1 Å

1VZI

Name: D. baarsi Superoxide reductase (SOR, EC # 1.15.1.2)

Description: SOR E47A complexed with chloride

X-ray source: ESRF Beamline ID14-2

Space group: I41 2 2

Unit cell: a=123.61 b=123.61 c=73.02

Resolution: 1.15 Å

1VZH

Name:D. baarsi Superoxide reductase (SOR, EC # 1.15.1.2)

Description: SOR E47A complexed with ferrocyanide with active site expansion upon photoreduction

X-ray source: ESRF Beamline ID14-4

Space group: P21 21 21
Unit cell: a=42.13 b=67.65 c=82.19

Resolution: 1.69 Å

1VZG

Name: D. baarsi Superoxide reductase (SOR, EC # 1.15.1.2)

Description: SOR E47A complexed with ferrocyanide

X-ray source: ESRF Beamline ID14-4

Space group: P21 21 21

Unit cell: a=42.13 b=67.65 c=82.19

Resolution: 1.69 Å

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Cambridge Crystallographic Data Center (CCSD)

729932

Name:
(μ-peroxo)(μ-hydroxo)bis[bis(bipyridyl) cobalt(III)] nitrate (HPBC)

Description: Caged-oxygen compound

X-ray source: Mo-target tube (λ=0.71 Å)

Space group: P-1

Unit cell: a=11.0774 b=13.4851 c=14.5529

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2VZX

Name: Dendronephthya sp. fluorescent protein Dendra2 Description: Dendra2 green fluorescent X-ray source: ESRF Beamline ID14-4 Space group: P1 Unit cell: a=71.26 b=76.85 c=92.50 Resolution: 2.00 Å